HySonLab

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40 repositories

ML4Insects
Public
Machine Learning for Automated Electrical Penetration Graph Analysis of Aphid Feeding Behavior: Accelerating Research on Insect-Plant Interactions
machine-learning signal-processing time-series-analysis fourier-transform wavelet-transform
Jupyter Notebook
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MIT License
•3•12•1•0•Updated Feb 10, 2026Feb 10, 2026
TeBaAb
Public
TeBaAb: Text-Based Antigen-Conditioned Antibody Redesign via Directed Evolution
natural-language-processing evolutionary-algorithm protein-design variational-autoencoder protein-language-model directed-evolution antibody-design binding-affinity-prediction
Python
•0•2•0•0•Updated Feb 8, 2026Feb 8, 2026
Polymers
Public
Multimodal Machine Learning for Soft High-k, Low-Modulus Polymers under Data Scarcity
machine-learning materials-science multimodal-deep-learning graph-neural-networks polymers sequence-learning constrastive-learning molecular-property-prediction
Python
•0•3•1•0•Updated Jan 27, 2026Jan 27, 2026
LearnMMF
Public
Learning to Solve Multiresolution Matrix Factorization by Manifold Optimization and Evolutionary Metaheuristics
evolutionary-algorithms wavelet-transform graph-convolutional-network graph-wavelet matrix-factorisation multiresolution-analysis stiefel-manifold-optimization directed-evolution
Python
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Other
•0•1•0•0•Updated Jan 23, 2026Jan 23, 2026
LINKER
Public
LINKER: Learning Interactions Between Functional Groups and Residues With Chemical Knowledge-Enhanced Reasoning and Explainability
machine-learning bioinformatics deep-learning artificial-intelligence neural-networks drug-discovery protein-ligand-interactions protein-ligand-binding-affinity molecular-modeling explainable-ai
Jupyter Notebook
•0•7•0•0•Updated Jan 21, 2026Jan 21, 2026
DiffPlace
Public
DiffPlace: A Conditional Diffusion Framework for Simultaneous VLSI Placement Beyond Sequential Paradigms
transfer-learning congestion vlsi-physical-design performance-optimization diffusion-models generative-ai chip-placement
Python
•1•7•1•0•Updated Jan 17, 2026Jan 17, 2026
Directed_Evolution
Public
Protein Design by Machine Learning guided Directed Evolution
proteins protein-design large-language-models directed-evolution
Python
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GNU General Public License v3.0
•6•47•0•0•Updated Jan 1, 2026Jan 1, 2026
BioMedKG
Public
Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs
knowledge-graph drug-repurposing link-prediction multimodal-learning constrastive-learning biomedical-knowledge-graph multimodal-knowledge-graph
Python
•5•28•0•0•Updated Dec 8, 2025Dec 8, 2025
WaveletPE
Public
Range-aware Graph Positional Encoding via High-order Pretraining: Theory and Practice
high-order wavelet-transform graph-wavelets graph-neural-networks graph-representation-learning graph-auto-encoder multiresolution-analysis graph-pretraining
Python
•1•2•0•0•Updated Nov 12, 2025Nov 12, 2025
EvoSynth
Public
EvoSynth: Enabling Multi-Target Drug Discovery through Latent Evolutionary Optimization and Synthesis-Aware Prioritization
evolutionary-algorithms drug-discovery multi-objective-optimization geometric-deep-learning molecule-generation generative-ai
Jupyter Notebook
•0•3•0•0•Updated Nov 5, 2025Nov 5, 2025
TESGraph
Public
TESGNN: 3D Temporal Equivariant Scene Graph Neural Networks (published at TMLR)
point-cloud scene-graph multi-view-learning scene-understanding graph-neural-networks equivariant-representations temporal-graph-learning equivariant-graph-neural-network
Jupyter Notebook
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Other
•0•14•1•0•Updated Nov 2, 2025Nov 2, 2025
LightMed
Public
FFTMed: leveraging fast-fourier transform for a lightweight and adversarial-resilient medical image segmentation framework (published at Scientific Reports - Na…
medical-imaging convolutional-neural-networks medical-image-processing fourier-transform adversarial-attacks medical-image-segmentation light-weight-network
Python
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MIT License
•3•11•0•0•Updated Oct 29, 2025Oct 29, 2025
AdaptFNO
Public
AdaptFNO: Adaptive Fourier Neural Operator with Dynamic Spectral Modes and Multiscale Learning
adaptive-learning partial-differential-equations fft pde multiscale fourier-neural-operator pdebench
Python
•1•5•0•0•Updated Sep 27, 2025Sep 27, 2025
ArcRoute
Public
Hierarchical Directed Capacitated Arc Routing Problem (HDCARP)
reinforcement-learning evolutionary-algorithms ant-colony-optimization heuristics routing-algorithm routing-problem arc-routing
Python
•2•8•0•1•Updated Sep 27, 2025Sep 27, 2025
EquiHGNN
Public
Rotationally Equivariant Hypergraph Neural Networks (EquiHGNN)
density-functional-theory quantum-chemistry higher-order molecular-modeling graph-neural-networks hypergraph-neural-networks equivariant-representations molecular-property-prediction molecular-representation-learning equivariant-graph-neural-network
Python
•2•12•1•0•Updated Sep 12, 2025Sep 12, 2025
PointDistill
Public
Topology-Guided Knowledge Distillation for Efficient Point Cloud Processing
point-cloud self-driving-car persistent-homology lidar-point-cloud distillation point-cloud-segmentation point-transformer
Python
•1•7•1•0•Updated Aug 17, 2025Aug 17, 2025
VietMedKG
Public
VietMedKG: Knowledge Graph and Benchmark for Traditional Vietnamese Medicine
knowledge-graph question-answering vietnamese-language traditional-chinese-medicine retrieval-augmented-generation
Python
•1•10•0•0•Updated Jul 24, 2025Jul 24, 2025
FactAgent
Public
Towards Robust Fact-Checking: A Multi-Agent System with Advanced Evidence Retrieval
fact-checking multi-agent-systems explainable-ai large-language-models misinformation-detection
Python
•3•10•1•0•Updated Jun 24, 2025Jun 24, 2025
DrugPipe
Public
DrugPipe: Generative artificial intelligence-assisted virtual screening pipeline for generalizable and efficient drug repurposing
protein drug-discovery drug-repurposing protein-binding molecule-generation generative-ai
Python
•4•15•0•0•Updated Jun 9, 2025Jun 9, 2025
MatCPP
Public
Efficient Matheuristics for Solving the Chinese Postman Problem with Load Constraints
heuristics operations-research mixed-integer-programming chinese-postman-problem matheuristics
C++
•0•1•0•0•Updated May 15, 2025May 15, 2025
MGVAE
Public
Higher-order permutation-equivariant graph variational autoencoder to generate molecules in multiresolution manner. https://iopscience.iop.org/article/10.1088/…
variational-autoencoder graph-neural-networks molecule-generation generative-ai
Python
•0•3•0•0•Updated May 12, 2025May 12, 2025
Design2Code
Public
Large Language Model in combination with Large Vision Model for the task of code generation given design sketch.
website-generation code-generation multimodal graph-representation-learning multimodal-graphs visual-understanding vision-language-models
Python
•2•10•0•0•Updated Apr 29, 2025Apr 29, 2025
LatentDE
Public
LatentDE: Latent-based Directed Evolution for Protein Sequence Design
evolutionary-algorithm gradient-ascent variational-autoencoder protein-language-model directed-evolution protein-optimization
Python
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GNU General Public License v3.0
•2•37•0•0•Updated Apr 2, 2025Apr 2, 2025
MultiscaleHSI
Public
Multiscale spectral graph neural networks for hyperspectral imaging
image-segmentation hyperspectral-imaging graph-neural-networks multiscale-resolution
Python
•2•5•1•0•Updated Feb 25, 2025Feb 25, 2025
LANTERN
Public
LANTERN: Leveraging Large Language Models And Transformer For Enhanced Molecular Interaction
transformer protein-protein-interaction protein-ligand-interactions protein-language-model molecular-interactions large-language-models molecule-descriptors
Python
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MIT License
•0•2•1•0•Updated Feb 16, 2025Feb 16, 2025
Protein_Redesign
Public
ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models
protein protein-design protein-representation-learning diffusion-models ligand-binding equivariant-network
Python
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MIT License
•8•39•0•0•Updated Nov 25, 2024Nov 25, 2024
VietMed-Sum
Public
Real-time Speech Summarization for Medical Conversations in Vietnamese
Jupyter Notebook
•1•5•0•0•Updated Sep 7, 2024Sep 7, 2024
TWGNN
Public
Fast Temporal Wavelet Graph Neural Networks (NeurIPS 2023)
matrix-factorization traffic-prediction wavelet-transform brain-networks graph-neural-networks temporal-graph-learning
Python
•6•6•1•0•Updated Aug 10, 2024Aug 10, 2024
EntityKG
Public
wav2graph: A Framework for Supervised Learning Knowledge Graph from Speech
speech knowledge-graph asr entity-extraction
Python
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MIT License
•1•9•0•0•Updated Aug 9, 2024Aug 9, 2024
Protein_Pretrain
Public
Multimodal Pretraining for Unsupervised Protein Representation Learning
proteins protein-structure point-cloud protein-sequences variational-autoencoder multimodal-deep-learning graph-neural-networks pretrained-language-model equivariant-representations large-language-models
Python
•2•22•0•0•Updated Jul 30, 2024Jul 30, 2024