Lange Lab
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pepVet
PublicpepVet is an R package for proteolytic digest simulation, peptide-set scoring, enzyme comparison, and workflow preset selection for bottom-up proteomics.PXAudit
PublicAudit PRIDE proteomics study metadata from the command line. Scores each dataset on a 7-tier FAIR ladder and a quantification-readiness axis. Results land in a …HarmonizePy
PublicPure-Python batch-effect harmonization toolkit validated, ported from HarmonizRpxseek
PublicAutomated web scraper to collect and filter pediatric cancer datasets from ProteomeXchange.- Analysis snapshot of the "Statistical testing for protein equivalence identifies core functional modules conserved across 360 cancer cell lines and presents a g…
ProteoForge_Analysis
PublicRoLiM_Standalone
PublicRoLiM
PublicLibrary-Filtering
PublicSQuAPP
PublicShiny App allows streamlined analysis of multiple levels of proteomics data.Rolim_DE
Public
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