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    • OpenMS

      Public
      The codebase of the OpenMS project
      C++
      37856130769Updated Jan 31, 2026Jan 31, 2026
    • pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
      Python
      7350485Updated Jan 30, 2026Jan 30, 2026
    • umetaflow

      Public
      Graphical user interface for the UmetaFlow pipepline for the analysis of metabolomics LC-MS data.
      Python
      101001Updated Jan 30, 2026Jan 30, 2026
    • quantms-web

      Public
      Python
      0005Updated Jan 30, 2026Jan 30, 2026
    • streamlit-template

      Public
      Python
      34163323Updated Jan 30, 2026Jan 30, 2026
    • OpenMS-docs

      Public
      OpenMS Documentation.
      CSS
      2625610Updated Jan 29, 2026Jan 29, 2026
    • Hugo sources for the OpenMS website
      HTML
      18043Updated Jan 29, 2026Jan 29, 2026
    • OpenMS-toolbox

      Public
      Python
      0005Updated Jan 29, 2026Jan 29, 2026
    • Streamlit deployment with Docker
      10104Updated Jan 28, 2026Jan 28, 2026
    • Streamlining Mass Spectrometry Data Visualization with Pandas
      Jupyter Notebook
      192197Updated Jan 28, 2026Jan 28, 2026
    • Scripts for generating plots about the usage of OpenMS
      Python
      4202Updated Jan 15, 2026Jan 15, 2026
    • autowrap

      Public
      Generates Python Extension modules from Cythons PXD files
      Python
      2377335Updated Jan 14, 2026Jan 14, 2026
    • oDIAFlow

      Public
      An Open Nextflow pipeline for analyzing DIA-MS (Data-Independent Acquisition Mass Spectrometry) data.
      Nextflow
      15170Updated Dec 20, 2025Dec 20, 2025
    • Assets

      Public
      Additional files (logos, splash screen, icons)
      2030Updated Dec 18, 2025Dec 18, 2025
    • Pythonic wrappers around PyOpenMS !!!!!!!!!!! under heavy development - only for internal use !!!!!!!!!!!
      Python
      1001Updated Dec 16, 2025Dec 16, 2025
    • Conda recipes for the bioconda channel.
      Shell
      3.7k000Updated Dec 12, 2025Dec 12, 2025
    • contrib

      Public
      Automated CMake build scripts for the OpenMS contrib libraries
      CMake
      22041Updated Dec 12, 2025Dec 12, 2025
    • Nodes etc. related to OpenMS
      Java
      83121Updated Dec 11, 2025Dec 11, 2025
    • Tutorials

      Public
      a dummy repo so we can have a checksum for GHA
      TeX
      0000Updated Dec 11, 2025Dec 11, 2025
    • External binary dependencies (e.g. search engine binaries) packaged in installers
      13211Updated Dec 11, 2025Dec 11, 2025
    • FLASHApp

      Public
      Python
      0004Updated Dec 3, 2025Dec 3, 2025
    • mz-calculator

      Public archive
      Python
      0105Updated Oct 20, 2025Oct 20, 2025
    • Holds the packaged sources of chosen and tested versions of most of our needed contrib libraries.
      0000Updated Oct 15, 2025Oct 15, 2025
    • dockerfiles

      Public archive
      This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.
      Dockerfile
      8220Updated Jun 2, 2025Jun 2, 2025
    • Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)
      TeX
      1914380Updated May 20, 2025May 20, 2025
    • SagePTMScanner OpenMS WebApp
      Python
      1002Updated Mar 11, 2025Mar 11, 2025
    • .github

      Public
      OpenMS organization public GitHub profile repository
      2200Updated Mar 4, 2025Mar 4, 2025
    • Code for our new webpage
      HTML
      0000Updated Sep 3, 2024Sep 3, 2024
    • NSIS

      Public
      A ready-to-use NSIS with 8k strings support and ModernUI
      0200Updated Nov 9, 2023Nov 9, 2023
    • Holds the scripts for setting up basic platform specific (but machine independent) environments to build OpenMS for different purposes.
      CMake
      2220Updated Aug 15, 2023Aug 15, 2023