All

102 repositories

schlosslab.github.io
Public
The website for the Schloss Lab at the University of Michigan
HTML
•29•8•2•0•Updated Jan 19, 2026Jan 19, 2026
clustur
Public
Cluster algorithms from mothur in R
C++
•
GNU General Public License v3.0
•0•2•1•0•Updated Jan 11, 2026Jan 11, 2026
Schloss_RPCA_mSystems_2026
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Dec 22, 2025Dec 22, 2025
Colovas_Data_Accessibility
Public
New repository for Data Accessibility project begun by Adena Collens.
schlosslab-r schlosslab-greatlakes schlosslab-papers-wip
schlosslab-r schlosslab-greatlakes schlosslab-papers-wip
HTML
•0•0•0•0•Updated Nov 19, 2025Nov 19, 2025
mikropml
Public
User-Friendly R Package for Supervised Machine Learning Pipelines
machine-learning rstats r-package
machine-learning rstats r-package
R
•
Other
•21•62•10•2•Updated Nov 3, 2025Nov 3, 2025
mikropml-snakemake-workflow
Public template
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
machine-learning snakemake rstats
machine-learning snakemake rstats
Python
•
MIT License
•4•13•8•2•Updated Feb 26, 2025Feb 26, 2025
CppThreadingExample
Public
C++
•0•0•0•0•Updated Jan 27, 2025Jan 27, 2025
Schloss_phylotypr_MRA_2024
Public
TeX
•
MIT License
•0•0•0•0•Updated Dec 16, 2024Dec 16, 2024
Johnson_clustur_MRA_2024
Public
TeX
•
MIT License
•0•1•0•0•Updated Dec 16, 2024Dec 16, 2024
Schloss_Rarefaction_mSphere_2024
Public
R
•
MIT License
•0•3•0•0•Updated Feb 14, 2024Feb 14, 2024
gol
Public
What the Package Does (One Line, Title Case)
0•1•0•0•Updated Feb 12, 2024Feb 12, 2024
GildedRose
Public
Inventory for the Gilded Rose
R
•
Other
•0•0•0•0•Updated Nov 20, 2023Nov 20, 2023
Schloss_WNWN_mSphere_2023
Public
TeX
•
MIT License
•0•1•0•0•Updated Nov 9, 2023Nov 9, 2023
schtools
Public
Schloss Lab Tools for Reproducible Microbiome Research 💩
rstats microbiome r-package
rstats microbiome r-package mothur
R
•
Other
•11•32•7•1•Updated Aug 22, 2023Aug 22, 2023
ori_mikropml_snakemake_workflow
Public
HTML
•
MIT License
•0•0•0•0•Updated Aug 10, 2023Aug 10, 2023
severe-CDI
Public
Predicting CDI severity from OTUs
R
•
Other
•1•2•0•0•Updated Jul 12, 2023Jul 12, 2023
Armour_OptiFitGLNE_mSphere_2023
Public
Application of the OptiFit algorithm to CRC dataset to predict SRNs from microbiome data
R
•
Creative Commons Zero v1.0 Universal
•0•0•4•1•Updated Jul 5, 2023Jul 5, 2023
Schloss_Singletons_XXXXX_2023
Public
TeX
•
MIT License
•0•3•1•0•Updated Jun 18, 2023Jun 18, 2023
quarto_code_club
Public
Introduction to Using Quarto
TeX
•0•0•0•0•Updated Mar 13, 2023Mar 13, 2023
Schloss_CodeClub_MRA_2022
Public
TeX
•
MIT License
•0•0•0•0•Updated Dec 21, 2022Dec 21, 2022
mothur-snakemake-workflow
Public template
Snakemake template for microbial amplicon sequence analysis with mothur.
snakemake mothur 16s-rrna
snakemake mothur 16s-rrna
Python
•
Other
•0•3•3•0•Updated Dec 8, 2022Dec 8, 2022
just-enough-python
Public
Just enough Python for R users to write advanced Snakemake workflows
python tutorial snakemake
python tutorial snakemake rstats code-club quarto
R
•
Other
•0•1•0•0•Updated Nov 25, 2022Nov 25, 2022
Barron_IBD-CDI_mBio_2022
Public archive
ML analysis to predict C. difficile colonization in fecal communities of IBD & control mice.
machine-learning reproducible-research ibd
machine-learning reproducible-research ibd c-difficile
R
•
Other
•0•0•0•0•Updated Oct 13, 2022Oct 13, 2022
Armour_Resolution_mBio_2021
Public
Analysis of optimal taxonomic resolution for predicting SRNs from microbiome data
R
•0•2•0•0•Updated Aug 18, 2022Aug 18, 2022
Lesniak_Severity_mBio_2022
Public
TeX
•
MIT License
•1•2•0•0•Updated Jul 15, 2022Jul 15, 2022
Lesniak_restoreCR_mBio_2022
Public
R
•
MIT License
•1•1•0•0•Updated Jul 15, 2022Jul 15, 2022
logos
Public
The lab's hex logos combined in one image
Other
•0•0•0•0•Updated Jun 2, 2022Jun 2, 2022
Sovacool_OptiFit_mSphere_2022
Public archive
The manuscript accompanying the OptiFit algorithm in mothur
snakemake microbiome mothur
snakemake microbiome mothur reproducible-paper
Python
•
Other
•2•2•0•0•Updated Jun 1, 2022Jun 1, 2022
snakemake_cluster_tutorial
Public
Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.
Python
•1•15•1•0•Updated Mar 22, 2022Mar 22, 2022
Great_Lakes_SLURM
Public
Using the Great Lakes cluster and batch computing with SLURM
hpc slurm batch-computing
hpc slurm batch-computing
5•28•2•0•Updated Feb 15, 2022Feb 15, 2022

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SchlossLab

All

All

102 repositories

schlosslab.github.io

clustur

Schloss_RPCA_mSystems_2026

Colovas_Data_Accessibility

mikropml

mikropml-snakemake-workflow

CppThreadingExample

Schloss_phylotypr_MRA_2024

Johnson_clustur_MRA_2024

Schloss_Rarefaction_mSphere_2024

gol

GildedRose

Schloss_WNWN_mSphere_2023

schtools

ori_mikropml_snakemake_workflow

severe-CDI

Armour_OptiFitGLNE_mSphere_2023

Schloss_Singletons_XXXXX_2023

quarto_code_club

Schloss_CodeClub_MRA_2022

mothur-snakemake-workflow

just-enough-python

Barron_IBD-CDI_mBio_2022

Armour_Resolution_mBio_2021

Lesniak_Severity_mBio_2022

Lesniak_restoreCR_mBio_2022

logos

Sovacool_OptiFit_mSphere_2022

snakemake_cluster_tutorial

Great_Lakes_SLURM

All

All

Repositories list

102 repositories