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    19 repositories

    • yeat

      Public
      YEAT: Your Everyday Assembly Tool
      Python
      •
      Other
      •1•1•18•0•Updated Aug 25, 2026Aug 25, 2026

    • mixder

      Public
      Mixture deconvolution workflow for Kintelligence SNPs
      R
      •
      Other
      •1•2•2•1•Updated Aug 12, 2026Aug 12, 2026

    • pytaxonkit

      Public
      Python bindings for the TaxonKit library
      pythonbioinformaticstaxonomy
      pythonbioinformaticstaxonomyhacktoberfest
      Python
      •
      Other
      •6•43•0•0•Updated Aug 3, 2026Aug 3, 2026

    • lusSTR

      Public
      Tool to convert ForenSeq sequence strings to various annotation types for downstream analyses
      Python
      •
      Other
      •0•6•1•2•Updated Jun 9, 2026Jun 9, 2026

    • pLannotate

      Public
      Webserver and command line tool for annotating engineered plasmids
      Python
      •
      GNU General Public License v3.0
      •34•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • ezfastq

      Public
      Python
      •
      Other
      •0•0•1•0•Updated Apr 6, 2026Apr 6, 2026

    • rsidx

      Public
      Library for indexing VCF files for random access searches by rsID
      searchbioinformaticsgenomics
      searchbioinformaticsgenomicsvariant-annotation
      Python
      •
      Other
      •4•17•1•0•Updated Mar 2, 2026Mar 2, 2026

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6.3k•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • MicroHapDB

      Public
      Portable database of microhaplotype marker and allele frequency data
      bioinformaticsngsforensics
      bioinformaticsngsforensicshacktoberfestmicrohaplotypes
      Python
      •
      Other
      •4•13•1•0•Updated Oct 2, 2025Oct 2, 2025

    • alpine-pixi

      Public
      Dockerfile
      •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • manylinux2014-rust

      Public
      Dockerfile
      •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • MicroHapulator

      Public
      Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
      bioinformaticsngsforensics
      bioinformaticsngsforensicshacktoberfestmicrohaplotypes
      Python
      •
      Other
      •1•9•6•0•Updated Jun 16, 2025Jun 16, 2025

    • mhrs

      Public
      Rust
      •0•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • claspy

      Public
      Cell line authentication with STRs in Python
      Python
      •
      Other
      •0•1•2•0•Updated Jun 28, 2024Jun 28, 2024

    • asm_tools

      Public archive
      Assembly utility scripts used to assemble bacterial isolates sequenced on Illumina paired-end sequencers
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 15, 2020Aug 15, 2020

    • docker-centos7-conda

      Public
      Dockerfile
      •0•0•0•0•Updated Mar 20, 2020Mar 20, 2020

    • happer

      Public archive
      Python
      •
      Other
      •0•0•0•0•Updated May 2, 2019May 2, 2019

    • MicroGenie

      Public archive
      Python
      •0•0•0•0•Updated Apr 5, 2019Apr 5, 2019

    • blast-validate

      Public
      BLAST-based validation of metagenomic sequence assignments
      Perl
      •4•7•0•0•Updated Jun 7, 2018Jun 7, 2018
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