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    172 repositories

    • growthcurves

      Public
      Calculate the most relevant growth curve parameters with different methods (models, sliding window, etc.)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•8•12•3•Updated Sep 14, 2026Sep 14, 2026

    • mycol

      Public
      An app facilitating intuitive access to computer vision models for biological data analysis.
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Sep 14, 2026Sep 14, 2026

    • data-catalog-resources

      Public
      This is the resource page for Biosustain Data Catalog
      JavaScript
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Sep 14, 2026Sep 14, 2026

    • bigg_models

      Public
      CSS
      •
      MIT License
      •1•0•0•0•Updated Sep 14, 2026Sep 14, 2026

    • bigg_maps

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 14, 2026Sep 14, 2026

    • cobradb

      Public
      Python
      •
      MIT License
      •1•1•2•0•Updated Sep 14, 2026Sep 14, 2026

    • bigg

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Sep 14, 2026Sep 14, 2026

    • lifelike

      Public
      Turning big data into contextualized knowledge. Lifelike is a modern application platform for data extraction, analysis and visualization.
      pythondockerangular
      pythondockerangularbioinformaticsbig-datahelmknowledge-graphscientific-computing
      Python
      •1•2•0•0•Updated Sep 14, 2026Sep 14, 2026

    • dsp_bulk-sangerseq

      Public
      Prototype tool for the bulk analysis and visualisation of Sanger sequencing data
      HTML
      •
      GNU General Public License v3.0
      •0•1•7•4•Updated Sep 11, 2026Sep 11, 2026

    • pankb

      Public
      The Pangenome Knowledge Base (PanKB) serves as an up-to-date resource for pangenomics research methods and the dissemination of results and currently offers bas…
      HTML
      •
      MIT License
      •1•7•0•0•Updated Sep 10, 2026Sep 10, 2026

    • tracy-visualisations

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Sep 9, 2026Sep 9, 2026

    • dsp_course_metabolomics_intro

      Public
      About Introduction to massspectrometry-based metabolomics (raw data processsing and downstream analysis).
      Jupyter Notebook
      •1•1•8•1•Updated Sep 8, 2026Sep 8, 2026

    • dsp_notes

      Public
      Public notes and hints of the Data Science Platform.
      Python
      •1•1•2•6•Updated Sep 4, 2026Sep 4, 2026

    • pankb_mcp

      Public
      MCP-based microservice for PanKB with FastMCP server, AI client, and Streamlit integration.
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 30, 2026Aug 30, 2026

    • bigg_models_data

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 30, 2026Aug 30, 2026

    • dsp_transcriptomics_27200-Data-driven-bioengineering

      Public
      Transcriptomics
      HTML
      •0•0•0•0•Updated Aug 19, 2026Aug 19, 2026

    • dsp_nf_seabed_symphony

      Public
      Nextflow implementation of a metagenomics pipeline for BGCs identification
      Nextflow
      •0•1•0•0•Updated Aug 15, 2026Aug 15, 2026

    • guidelines

      Public
      Guidelines for employees and collaborators at BRIGHT, with the goal of educating readers and minimizing the likelihood of issues arising with our computational …
      best-practicesguidelines
      best-practicesguidelines
      0•4•0•0•Updated Aug 6, 2026Aug 6, 2026

    • filter_pathways_app

      Public
      Query and filter Uniprot pathways and protein annotations in a simple streamlit app.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 22, 2026Jul 22, 2026

    • growthcurves_app

      Public
      Growth Curve apps for Plate Reader and Pio Reactor experiments using the growthcurves Python Package
      Python
      •
      GNU General Public License v3.0
      •1•3•14•3•Updated Jul 17, 2026Jul 17, 2026

    • dsp_pandas

      Public
      Organize pandas based functionality across projects.
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 14, 2026Jul 14, 2026

    • dsp_transcriptomics_training

      Public
      Introduction course to transcriptomics
      HTML
      •3•8•1•1•Updated Jul 8, 2026Jul 8, 2026

    • python_package

      Public template
      Example Python package
      Python
      •
      GNU General Public License v3.0
      •2•3•5•3•Updated Jul 6, 2026Jul 6, 2026

    • dsp_course_proteomics_intro

      Public
      Introduction to massspectrometry-based proteomics.
      HTML
      •5•4•3•2•Updated Jun 9, 2026Jun 9, 2026

    • annotated-align-visualiser

      Public
      JavaScript
      •0•0•0•0•Updated Jun 4, 2026Jun 4, 2026

    • dsp_course_proteomics_intro_report

      Public
      Example report(s) based on analysis in proteomics data type course
      HTML
      •0•0•0•0•Updated Jun 2, 2026Jun 2, 2026

    • quantms-containers

      Public
      DIANN docker container and OpenMS release for quantms
      Dockerfile
      •
      Apache License 2.0
      •8•0•0•1•Updated May 26, 2026May 26, 2026

    • dsp_metagenomics_training

      Public
      Introduction course to metagenomics data analysis
      HTML
      •
      GNU General Public License v3.0
      •2•4•1•1•Updated May 13, 2026May 13, 2026

    • salb_GEM_biosustain

      Public
      GEM for Streptomyces albus J1074
      gemmodelmetabolism
      gemmodelmetabolismstreptomycessalb-gem
      HTML
      •
      MIT License
      •0•1•0•0•Updated May 12, 2026May 12, 2026

    • db-interop-registry

      Public
      Python
      •
      MIT License
      •0•0•2•6•Updated May 8, 2026May 8, 2026
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