HuBMAP Consortium
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191 repositories
- Manually curated HRA Dataset Graphs
- HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)
- HuBMAP Data Ingest Portal
- This repository contains a collection of JSON files representing mappings between legacy schemas and updated schemas stored as CEDAR templates.
- HuBMAP Data Portal front end
- General Documentation For HuBMAP
- 3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation
- OME-TIFF/OME-XML utility functions
- HuBMAP Data Ingest API
- Data ingest pipeline(s) for QA/metadata etl/post-processing
- HuBMAP search service and associated pieces to create an index
- This repository stores all the next-generation dataset metadata specification produced by the Data Coordination Working Group (DCWG). Every distinct folder corr…
hra-kg
PublicHuman Reference Atlas Knowledge Graphdeepcelltypes
Public- Pipeline for unified processing of joint RNA-seq and ATAC-seq measurements for single cells
salmon-rnaseq
PublicscRNA-seq pipeline using Salmon for quantificationstellar
Publicentity-api
PublicA set of web service calls to return information about HuBMAP entitiesgateway
Publicingest-validation-tools
Publicccf-validation-tools
PublicHRA ASCT+B Validation Reportsccf-grlc
Publicccf-grlc: Useful SPARQL queries for HRA work + API via grlc.ioaws-api-gateway
PublicAPI definitions, Lambda functions/authorizers/layer, and documentations to work with AWS API Gatewayhra-do-processor
Publichra-do-processor: HRA Digital Objects Processoratac-data-products
PublicData product creation for HIVE-processed ATAC-seq datasets