Skip to content

@mskcc-omics-workflows MSKCC Omics Workflows

Change the repository type filter

All

    Repositories list

    12 repositories

    • modules

      Public
      A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC
      omicsmskccnf-core
      omicsmskccnf-corenextflnextflow-dsl2
      Python
      •
      GNU Affero General Public License v3.0
      •6•11•40•9•Updated Jul 10, 2026Jul 10, 2026

    • containers

      Public
      Mono-repository for custom docker containers used in nextflow modules
      Dockerfile
      •0•0•1•4•Updated Jun 26, 2026Jun 26, 2026

    • skills

      Public
      Shareable Agent Skills for working with the mskcc-omics-workflows organization
      0•0•0•0•Updated Jun 22, 2026Jun 22, 2026

    • configs

      Public
      Config files used to define parameters specific to compute environments
      Nextflow
      •
      MIT License
      •366•0•0•1•Updated Jun 15, 2026Jun 15, 2026

    • test-datasets

      Public
      1•0•0•0•Updated May 8, 2026May 8, 2026

    • access_data_analysis_nf

      Public
      msk access data analysis nextflow pipeline
      Nextflow
      •
      MIT License
      •1•0•13•2•Updated Apr 23, 2026Apr 23, 2026

    • access_data_analysis_nf_old

      Public
      access data analysis nf
      Nextflow
      •
      MIT License
      •2•0•3•0•Updated Jul 17, 2025Jul 17, 2025

    • yaml_to_md

      Public
      Python script that converts a YAML file specifically Nextflow meta.yaml into a Markdown file based on a specified JSON schema
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 9, 2025Jan 9, 2025

    • .github

      Public
      0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • modules-fork

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •1.1k•0•0•6•Updated Sep 20, 2023Sep 20, 2023

    • nextflow-training

      Public
      Training materials for an introduction to nextflow and nf-core.
      Nextflow
      •1•1•0•0•Updated Jul 12, 2023Jul 12, 2023

    • nfcore-cmd

      Public
      Python package with helper tools for the nf-core community.
      Python
      •
      MIT License
      •250•0•0•0•Updated Dec 16, 2022Dec 16, 2022
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.