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1. computational-immunology-bootcamp computational-immunology-bootcamp Public

2. pathology-fibrosis-pipeline pathology-fibrosis-pipeline Public

   Computational pathology pipeline for tissue fibrosis quantification from whole-slide images using foundation model embeddings

   Jupyter Notebook 1

3. ncountr ncountr Public

   Python pipeline for Nanostring nCounter gene expression analysis — parse, QC, normalize, DE, pathway scoring

   Python 2

4. GePMI GePMI Public

   GePMI: A statistical model for personal intestinal microbiome identification

   Python 6

5. ShenLab/viralTCR ShenLab/viralTCR Public

   A machine learning method to predict TCR-peptide binding

   Python 4

6. G2VTCR G2VTCR Public

   Python 1