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Hi-C contact maps in Pretext format missing data

Status: Open.

#156 In sanger-tol/genomeassembly;

· TannerMyers opened on Jun 22, 2026

Option to publish GenomeScope2 output plots?

Status: Open.

#155 In sanger-tol/genomeassembly;

· amytims opened on Jun 15, 2026

BUSCO step hangs

Status: Open.

#154 In sanger-tol/genomeassembly;

· cjfields opened on Jun 12, 2026

Problem with reusing Hi-C data to scaffold multiple samples' assemblies

Status: Open.

#153 In sanger-tol/genomeassembly;

· TannerMyers opened on Jun 8, 2026

Scaffolding best practices when chromosome number is known?

Status: Open.

#148 In sanger-tol/genomeassembly;

· nikostr opened on Apr 28, 2026

Allow "resume mode" with input of pre-existing assembly

enhancementNew feature or requestNew feature or request

Status: Open.

#136 In sanger-tol/genomeassembly;

· prototaxites opened on Apr 16, 2026

·  

1.1

Scaffolding with RagTag

enhancementNew feature or requestNew feature or request

Status: Open.

#118 In sanger-tol/genomeassembly;

· prototaxites opened on Feb 27, 2026

·  

1.1

Using the date in output folders is causing issues for us

Status: Open.

#116 In sanger-tol/genomeassembly;

· TomHarrop opened on Feb 19, 2026

Support polyploid assembly

enhancementNew feature or requestNew feature or request

Status: Open.

#111 In sanger-tol/genomeassembly;

· prototaxites opened on Jan 29, 2026

·  

2.0

Input & help files

enhancementNew feature or requestNew feature or request

Status: Open.

#36 In sanger-tol/genomeassembly;

· cintiaoi opened on Apr 3, 2024

purge_dups and hifiasm?

enhancementNew feature or requestNew feature or request

Status: Open.

#35 In sanger-tol/genomeassembly;

· nikostr opened on Mar 21, 2024