FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.

Genin2 is a lightining-fast bioinformatic tool to predict genotypes for H5 viruses belonging to the European clade 2.3.4.4b

FluTyper is a modular, reproducible Nextflow pipeline for genotyping influenza viruses (avian and human) and characterizing relevant mutations. It is designed for genomic surveillance, research, and integration within a One Health framework.

Analysis on bird species captured in Ireland from 1980 to 2020 and wild birds that are targeted for the H5N1 strain of avian flu.

Global viral genomic surveillance dashboard — real-time outbreak monitoring, interactive maps & public API for 50+ pathogens (COVID-19, Ebola, dengue, avian flu, mpox). An independent open-science project. → infectonet.org

Code repository associated with Brierley et al., 'An AI for AI..'

Code and Data for Dynamics and control of highly pathogenic H5 avian influenza in a threatened pelican population

This data specification harmonizes contextual data to support HPAI monitoring with PHA4GE. It provides standardized, ontology-based fields and terms for comprehensive surveillance. Users can implement it via their preferred tools, including DataHarmonizer. Field and reference guides, along with curation and new term request SOPs, support its use.

Hacking Avian Influenza with python

Public-interest tracker mapping H5 (H5N1) avian influenza detections worldwide, auto-updated daily from official agency data. Static site + Node pipeline in GitHub Actions.

The study focuses on modeling and predicting H5N1 bird flu outbreaks in the United States at the county level, utilizing diverse statistical techniques and machine learning models.