RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX

An awesome microRNA-sequencing pipeline

Simple downstream stratification of miRDeep2 outputs via XGBoost

Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

This is a pipeline for microRNA extraction from raw sequences

End-to-end Snakemake pipeline for miRNA / small RNA-seq: QC, trimming, Bowtie/miRDeep2/miRge3 quantification, DESeq2+edgeR DE, isomiR, multiMiR targets, pathway enrichment, HTML report.