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jackh726
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jackh726
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Nov 21, 2020
| #!/usr/bin/env python | ||
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| # Author: Jin Lee (leepc12@gmail.com) | ||
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Add a # Copied <git sha> line here
| val nth: Int = 4, | ||
| val chrsz: File, | ||
| val mitoChrName: String = "chrM" | ||
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| --out-dir $outputsDir/bowtie2 \ | ||
| ${input.mergedR1.dockerPath} $outputsDir/bowtie2/${input.exp}.${input.repName}".srt.bam | ||
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| ls -lh $outputsDir/bowtie2 |
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Probably not needed?
jackh726
commented
Nov 21, 2020
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| from encode_lib_common import ( | ||
| mkdir_p, log, ls_l, rm_f, strip_ext_fastq) | ||
| from encode_lib_genomic import ( | ||
| get_read_length, remove_chrs_from_bam, samstat, samtools_index) |
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from common.encode_common import *
from common.encode_common_genomic import *
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