Discussions

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  RuntimeWarnings during confound correction

  MrImaging asked Feb 5, 2026 in Q&A · Answered

  

  

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  Atlas usage for analysis

  MrImaging asked Jan 12, 2026 in Q&A · Answered

  

  

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  Segmentation fault in structural-preprocessing.sh

  shadow6661 asked Nov 20, 2025 in Q&A · Unanswered

  

  

  

  

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  Merging separate preprocessing streams during analysis/diagnostics?

  MrImaging asked Nov 21, 2025 in Q&A · Closed · Unanswered

  

  

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  Benchmarking of --num_ITK_threads thread management

  Gab-D-G announced Nov 11, 2025 in Announcements

  

  

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  Preprocess QC Orientation

  avareberg asked Aug 25, 2025 in Q&A · Closed · Answered

  

  

  

  

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  Ica-aroma in one shot resampling

  JonathanAdams02 asked Sep 22, 2025 in Q&A · Unanswered

  

  

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  -p MultiProc --local_threads N uses all available CPUs...

  MrImaging asked Aug 25, 2025 in Q&A · Answered

  

  

  

  

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  Transforming DWI images to template using RABIES output?

  geowk started Jul 28, 2025 in General

  

  

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  Consistent freezing at anat_inho_cor

  adpines asked May 8, 2025 in Q&A · Answered

  

  

  

  

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  Analysis question about priors

  colon-perez started Apr 18, 2025 in General

  

  

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  Individual preprocess steps?

  colon-perez started Apr 7, 2025 in General · Closed

  

  

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  Structural scan in standardized space?

  geowk started Feb 13, 2025 in General

  

  

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  t2 and functional scan from same animal collected during different sessions

  geowk started Jan 14, 2025 in General

  

  

  

  

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  Possibility to continue interrupted analysis?

  MrImaging asked Aug 23, 2024 in Q&A · Answered

  

  

  

  

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  Confound correction output contains voxels not present in the BOLD image

  mclooned asked Jan 20, 2025 in Q&A · Unanswered

  

  

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  Trait Error when running confound correction

  RLYounk started Dec 19, 2024 in General · Closed

  

  

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  More than 1 anat for 1 session with multiple runs

  geowk started Nov 26, 2024 in General

  

  

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  Question of Atlas

  qiudashuai1 started Oct 31, 2024 in General

  

  

  

  

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  Some question of data diagnosis

  qiudashuai1 started Oct 31, 2024 in General

  

  

  

  

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  something wrong of my QC results

  qiudashuai1 started Oct 24, 2024 in General

  

  

  

  

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  Question of crop and preprocess quality

  qiudashuai1 started Oct 27, 2024 in General

  

  

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  Question about inhomogeneity correction: What is otsu?

  geowk started Oct 4, 2024 in General · Closed

  

  

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  Preprocessing multi-echo data with RABIES?

  davidgruskin started Aug 11, 2023 in General

  

  

  

  

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  something wrong with --labels

  Rachelyolo asked Aug 21, 2024 in Q&A · Unanswered

  

  

  

  

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