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Add ENVO-OEO mapping-file#2068

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feature-2010-reasses-ENVO-mapping
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Add ENVO-OEO mapping-file#2068
LillyG901 wants to merge 1 commit intodevfrom
feature-2010-reasses-ENVO-mapping

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@LillyG901
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Summary of the discussion

See #2010

The goal of this PR is to add a SSSOM file that includes previously via anotation property skos:closeMatch matched terms from ENVO.
The match-type has been reassessed and often changed to skos:exactMatch. For the reasons of this change please check this table.

Type of change (CHANGELOG.md)

Add

  • envo-oeo sssom file

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@LillyG901 LillyG901 self-assigned this May 12, 2025
@LillyG901 LillyG901 changed the title Add first draft of mapping-file Add ENVO-OEO mapping-file May 12, 2025
@LillyG901
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@stap-m To fully close #2010 we would have to change/remove the preexisting mappings via annotation property. Should this be handled in a separate PR or should I also do this here?
Also would you prefer I remove them alltogether or should I just replace the skos:closeMatch with skos:exactMatch for all terms where we decided to change it?

@stale stale bot added the stale already discussed issues that haven't got worked on for a while label Jun 26, 2025
@cthoyt
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cthoyt commented Nov 21, 2025

hi @stap-m @LillyG901, I just talked with Mirjam and will prepare a demo using https://github.com/cthoyt/sssom-curator/ for predicting and curating such mappings between ENVO-OEO (and potentially other external ontologies)

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cthoyt commented Nov 27, 2025

FYI, that demo is in biopragmatics/biomappings#241

@stale stale bot removed the stale already discussed issues that haven't got worked on for a while label Nov 27, 2025
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