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Predict mappings between OEO and ENVO#241

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cthoyt merged 2 commits intomainfrom
add-oeo-envo
Nov 27, 2025
Merged

Predict mappings between OEO and ENVO#241
cthoyt merged 2 commits intomainfrom
add-oeo-envo

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@cthoyt cthoyt commented Nov 27, 2025

This PR uses the SSSOM Curator lexical matching workflow to predict 106 semantic mappings between entities in the Open Energy Ontology (OEO) and Environmental Ontology (ENVO). It complements OpenEnergyPlatform/ontology#2068.

It was done with the following commands:

$ git clone https://github.com/biopragmatics/biomappings.git
$ cd biomappings
$ uv pip install -e .[predict-lexical]
$ biomappings predict lexical oeo envo
$ git commit -am "Add predicted mappings between OEO and ENVO"
$ git push

After a first look, it appears that curating these mappings might be challenging because the upper level in ENVO and OEO often disagrees. For example, in OEO, "power plant" is described from the functional perspective whereas in ENVO, it's described as a kind of building.

cc @LillyG901 @stap-m let's schedule a meeting and I can give you a tutorial on how to run the web-based curation software built-in to this repository

@cthoyt cthoyt merged commit ca554ee into main Nov 27, 2025
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@cthoyt cthoyt deleted the add-oeo-envo branch November 27, 2025 12:31
@cthoyt cthoyt changed the title Map between OEO and ENVO Predict mappings between OEO and ENVO Nov 27, 2025
cthoyt added a commit to biopragmatics/bioregistry that referenced this pull request Nov 27, 2025
While preparing biopragmatics/biomappings#241, I
ran into several new prefixes mentioned in ENVO and OEO. In this PR, I
curated new Bioregistry records for them (the SWEET ones got spun out
into their own PR #1772)
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