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Are contaminant proteins automatically screened out?

Status: Open.

#107 In Nesvilab/FragPipe-Analyst-doc;

· dtabb73 opened on Jan 19, 2026

Pipelines to visualise proteomics and phosphoproteomics data using the latest version of fragpipe-analyst

Status: Open.

#97 In Nesvilab/FragPipe-Analyst-doc;

· Yeelon95 opened on Jul 16, 2025

Use of Analyst with isotopic MS1 quant data?

enhancementNew feature or requestNew feature or request

Status: Open.

#89 In Nesvilab/FragPipe-Analyst-doc;

· BjoernZiehr opened on May 22, 2025

Error analysing "combined modified peptide.tsv".

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#61 In Nesvilab/FragPipe-Analyst-doc;

· Prashant-OIST opened on Nov 30, 2024

Filter and DIANN

enhancementNew feature or requestNew feature or request

Question

Status: Open.

Feature

#59 In Nesvilab/FragPipe-Analyst-doc;

· TANIAKMONS opened on Nov 26, 2024

Automatic log generation beyond PDF report

Status: Open.

#38 In Nesvilab/FragPipe-Analyst-doc;

· edunivers opened on Jun 27, 2024

VSN normalization also for TMT data

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#21 In Nesvilab/FragPipe-Analyst-doc;

· fstein opened on Feb 15, 2024